NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242655_10245353

Scaffold Ga0242655_10245353


Overview

Basic Information
Taxon OID3300022532 Open in IMG/M
Scaffold IDGa0242655_10245353 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023640Metagenome / Metatranscriptome209Y
F073894Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0242655_102453531F023640GGAGMILALVLVIAAIVALGTILRLALTQHLQVSRERAGQVGSIRPIDIEAFRNLVDSAEDEYLRRRLSPAEFRAVRRTRLRAMAAYVR
Ga0242655_102453532F073894N/AALFLFLFAAHFKLIWNHRAFGIALGLGVVWCEHMAVWALNASGAWLDKSSLLDFLNMATYHVCVLIWFYFLLVPEKVATTSAVSLPENNLDIWNRELERLLQQ

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