Scaffold Ga0242655_10013407

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0242655_10013407

Scaffold Ga0242655_10013407

Overview

Basic Information
Taxon OID	3300022532 Open in IMG/M
Scaffold ID	Ga0242655_10013407 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1627
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035922	Metagenome / Metatranscriptome	171	N
F087572	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242655_100134071	F087572	N/A	DIMTNGATHQHRRFSRLAITAGATVLAIGLLTIGSVLYSTNDASADTTPTFSAFTRAAEAPATLEILSSPVIDTNSEFFFGTGDGSVGYYAERPNQ
Ga0242655_100134072	F035922	AGG	MDRLRYYLGACFILIFTHSASAAVIDALSQAGFTCLAATDSSGAPFGGTMCTHDAMSTAAFTLDEAVAVYVPSTTSAVVRHIVLYLQGFRGVCGDTGTTPADVMNVFDLAEQMQAESLPDSVLVFPMSGGHDTTYYHDFAASAGPFAEFMNWIETVIGEGQWSLAGHSGAGDVIAKSLNLNPSIITKFDAIELLDAAYIHHVAGRFRAGPEVALWRTIAERNPSLTLSCIGNGTYHGCQILAEQTGFTTVTLTETEVIHCDIPNTYFGPWLHRTGPGRVE

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