Scaffold Ga0242658_1006493

Overview

Basic Information

• Taxon OID: 3300022530
• Scaffold ID: Ga0242658_1006493
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1737
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011803	Metagenome / Metatranscriptome	287	Y
F023966	Metagenome / Metatranscriptome	208	Y
F044745	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242658_10064931	F023966	AGGAGG	MDHDNRVLIRRGARELSEQEVESVTGAFKTRRTLTPCFVDSKQQFLNGDQAIG
Ga0242658_10064933	F044745	AGGAG	MNAQNRVLSRKGARDLNEHEVTLVAGGLRTLTACTLAAAGTADGDTFHSECGSPDQ
Ga0242658_10064934	F044745	AGGAG	MNDQNRVLARKGARDLNEHEIERVAGGLRTATKCSVTPAGALDGDTFHSECGSPDQ
Ga0242658_10064935	F011803	AGGAG	MNNQNRVLIRRGARELTPTESEIVNGGFATFSLCTNAPHPDGDQHVGEFGC
Ga0242658_10064937	F011803	AGGAG	MNDQNRILIRRGARELTPTETDLINGGFRTLSFCTASPSPDGDQHVGEVGC