Scaffold Ga0242669_1015641

Overview

Basic Information

• Taxon OID: 3300022528
• Scaffold ID: Ga0242669_1015641
• Source Dataset Name: Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1043
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071602	Metagenome / Metatranscriptome	122	Y
F088377	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242669_10156411	F088377	N/A	RVTVEIDVSVAGQSSTYVFNCVRDGQVTVIQPLGMR
Ga0242669_10156412	F071602	N/A	GRLEVINRGIAGRGMSMAKHSYERGYPKHTALLAAPFLPVGAIALVPDTGWAQQQRTAATRTDTGRTDTTTVAMPNPDTPALDQALAACNQDAEKEPFTLPGLKGEFTLDRCYKGRAHLICAFEALSTEAKSLTGTYSNIVDAKYPELNTVDGVCQVSQQTLAADITGSEDFAKRFKELKSQYEAATKCIVTVEQAFKDVSLVGLTKAPEVVQSMTASIDGDVAKTSKVYEKISNLSTKMEVANRAMKMVTKLHHAMCMNEKSAEPSGRAAHR