Scaffold Ga0242664_1035681

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0242664_1035681

Scaffold Ga0242664_1035681

Overview

Basic Information
Taxon OID	3300022527 Open in IMG/M
Scaffold ID	Ga0242664_1035681 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	857
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003754	Metagenome / Metatranscriptome	470	Y
F075789	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242664_10356811	F003754	N/A	GSQMLLQRENGKDYLYVQQASQQGFMVVDVTRPEKPNLLKRTAEPNQATAGNLEMVTPNVAIAQSPEKTPTTLTSTNHPTETVRVLDLADPRNPKTLQEFAGVTSLLPDGGHGLIYLTNTDGLWVLRYNRPSLLEPSKKKPPCDSNSEIMAMPPDCD
Ga0242664_10356812	F075789	N/A	AVLYMSVSAAAQAGNANQQNADQHTKAKDEITVRGCLSRSNTDYILIQPEQGNSYELERSRRLRLGPYLGQEVEVTGSESPSMSTSSDFLARSGSASPVTIRVKTIKTIQKQCSQG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.