Scaffold Ga0224533_1000054

Overview

Basic Information

• Taxon OID: 3300022526
• Scaffold ID: Ga0224533_1000054
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14357
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224533_100005416	F003942	GGAG	MLGHRLNPAIHCYEDVELIEVHSEYLECSFVVARDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHSIYADQLSAMLYGAGLNPARS
Ga0224533_100005417	F042119	GAG	MNTIIREVNPARLAWGIFDHAKSGYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYRDKSGSAEHAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVKIVASQQEDVPAPQVQLALF
Ga0224533_100005418	F003764	GAG	MQIQLDSPYANDENPAALLAGAEIEAAGLHRCLKIVRLWSQSNALPRPRREEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGFLFPIPNYSATEASPATARK
Ga0224533_100005419	F004301	GGAG	MNAMQFSLFDARAAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLLFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ