Scaffold Ga0224534_1021478

Overview

Basic Information

• Taxon OID: 3300022524
• Scaffold ID: Ga0224534_1021478
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium RIFCSPHIGHO2_02_FULL_44_14 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032132	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224534_10214782	F032132	AGGAG	MDSFIIKAMVQALRPVLKDRGRAEKLMERFWQDKMALVWNLHDVHTAANEREVALTKQEAIKVLRELHRCHNKQYGLRWEDVTAYIYNHALGRKLTKAEVKRFVQRNILTIQR