Scaffold Ga0224534_1005271

Overview

Basic Information

• Taxon OID: 3300022524
• Scaffold ID: Ga0224534_1005271
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4831
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015327	Metagenome / Metatranscriptome	255	Y
F015623	Metagenome / Metatranscriptome	253	Y
F037826	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224534_10052713	F037826	GGAGG	MTLHPLFVAGVLEGFEGTLGEMVGRVENQELNAQLDALRGQVAALRLCIEEPPRRAEADRPPLET
Ga0224534_10052715	F015327	GGAGG	MEPNALVECAYELMRALKEELAERGTVAPAFILLHDRDCEVLTFSPRLFASAEGKVAVARAFRHRARQTGAHGALMGLDSNCFIPDLTAMREANPRLVQAAAGAGIDALIRSGFGKTSEGLSVTLQTPAFHLLVQQLYARGDNSIVFSELRTLDSREVPMEAAGLFSIYGGQHVTRG
Ga0224534_10052717	F015623	GAGG	MQQKLITVTLEPDGTSKIDLEGFADNACGKVMDDFRGGDRVLSERRKPEYYNRGGGQQLQQGNQ