NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224543_1009530

Scaffold Ga0224543_1009530


Overview

Basic Information
Taxon OID3300022519 Open in IMG/M
Scaffold IDGa0224543_1009530 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P1 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F085023Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0224543_10095301F000335GGTGGMPGNIAIAAPSGVMPATLSTAFTELREYAQLQNQYHDGTVQRTQLAQTSRRTFRLSKRLCAADLGTLYAFWIAKQGGLIPFAFYNPFEVAAGHDIGSNYDPTGNGTQGRVTVVFRGPWAQATDIARTNVQSLELVEV
Ga0224543_10095302F085023N/ANINGQPITPEFVTDQSMAAQGASYGRTQQAANMQVPGLMVA

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