Scaffold Ga0181351_1101528

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1101528
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1111
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F009503	Metagenome / Metatranscriptome	317	Y
F058101	Metagenome / Metatranscriptome	135	Y
F105039	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_11015282	F009503	GAGG	MEQVQFECRICKKVTRQLVHKITDNLPAGVEVIQCTKCEVMGVAQIGGTDADL
Ga0181351_11015283	F105039	AGAAGG	LWRLSVKIKLTTNEMCVCMVAAVKITSDKGQLLDLPRSYNNSSFMVYLAELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGTGIEVRWTKYELGQLIVYEYDRASDIAVLVTGEAPNYYIAGWIPVTMAQKPRYRHTKQPTWWVTQINLQPIENLRKSNYGTSAI
Ga0181351_11015284	F000403	N/A	MSDYMEVINVKTMTCKLLCNGEVVAEYKVEQCDKCSQITKLDSFGYQKGYDKHEKVIWFCGGCR
Ga0181351_11015285	F058101	N/A	VSARQHRAMGGAFAMSDFNLKKIYTSPDGKIYSFSGYGGVENCADCDDFTQTNEYDRDDGLVVFLCKRCEDRLHL