Scaffold Ga0181351_1087458

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1087458
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1229
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001781	Metagenome / Metatranscriptome	635	Y
F037727	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10874583	F000441	AGGAGG	MQQTDHYINTELSKAQALLWSGSLHEVDEAHNIISNLIQDRMGKAEGTNV
Ga0181351_10874584	F001781	GGAG	MKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGQGFSLEYGAEQHNDDVQEWMLSRDYIVDTMFEEDEEEDEDATD
Ga0181351_10874585	F000263	AGG	METLYKDDELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLSWAIDIEKETEEAMDSMSRTECEGRLDTLVELYKLTYALSFAIGARDEASR
Ga0181351_10874586	F037727	N/A	LEYIKLHRISLIQDNENLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNENERV