Scaffold Ga0181351_1039760

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1039760
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1987
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006843	Metagenome	363	Y
F014620	Metagenome	261	N
F039481	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10397601	F039481	N/A	PFIIKTVIAFALFTIGFGSGVLIAEPPLGQTDPVTAPYGAYTSFRDMQHDIWLYVAPSTTTTLVVKPVYKHGECDWLPAMALKAGWPVDQLGKLKQIALRESGCCIRRGGEKVDKDCKITGHDGSSHLSDTSILQINGLNFDIKRNPYAPICLQMGICTQEPLMDPFTNLKAGKLLYDYWQKAAGDGWIPWNMCNRDKTCK
Ga0181351_10397603	F014620	N/A	VQTDQLQMFAPSVGLGGTFERPAINRDIVIIAREATHTSRQAALKAKPKTGKNRVRVHNYLKQRSATDEEIETALGMSGNTVRPTRGTLVKDGHVKDSGFCRLTRAGNLAIVWECV
Ga0181351_10397605	F006843	AGTAGG	VFSVGNIVEKKTRYQMSNFMDNYVDVATRLKWAFEKYPDLRIQETHREIIEMPDKSCFIRCTVSIWRSATDPIPCVASACELYPGRTSFQKYS