Scaffold Ga0181351_1036853

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1036853
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N
F071998	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10368531	F071998	N/A	ISTMNASLLVTTAISKFPMAKRIAVENFTSGYDNLNMEASMNLSADTACYRWNAHTVKAIKYVLNNKPKNTR
Ga0181351_10368533	F015582	N/A	MNTNINPELQAEQLEDAKYLEELNHYVNTLATPSAEAVALYRAKLSNLEDIHTEIRAKYPNFMPIYDTSTDSECNHDLGKYQEMSYSISQRDMRRE
Ga0181351_10368534	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRNENNVAIYQRFNTDGTPRSYEVFIIKVVPKGAPLPNVKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV
Ga0181351_10368535	F019614	N/A	MLEVSTWRVYSIYTMNVASIASNKIQVEYSAMPGDGREFLTFKVPNGWDDVKRLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVNGPSFVASIR