Scaffold Ga0181351_1034283

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1034283
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2154
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F050366	Metagenome / Metatranscriptome	145	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10342833	F058101	GGAG	MTINPKDIHIATDGKIYSFSGFGGVMNCSDCDDDTMVNEYDRQDDGAVVWFCKRCEDRLH
Ga0181351_10342834	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTDHEWFAQCMSCGTFGIKIVDDARIGELSQ
Ga0181351_10342835	F000903	N/A	MIDRIEEVQCMIAAIQHCHDRSANHSSRIVKDISWFAYVAQMGESMAAEYLVAKELGYEYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWIPVVVAKKPRYRNASQNNWSVPQINLQPIDTLARSNYAHPSI
Ga0181351_10342836	F000403	GGAG	MSDFVEIIYPHEMKARLMCNGEIVEEYKIEQCDKCSQLRRFDHFGYQKGYDRQDNIIWFCGDCR
Ga0181351_10342837	F050366	N/A	RNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMALVKSESPAADYDYWTTKHGEVPSYQTAAEAEQSGTPSFGSSADSAWTADAIPSCRHGEMRWNQSKPDAAKSWGGYFCSEKIKENQCTPRWYVLRSTGKWEPQV