Scaffold Ga0181351_1027893

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1027893
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F043899	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10278931	F043899	N/A	MSIDDALDNLLKTSEMNSVQKTEPRQRQAEWMPGVTWQGEEGTVTTTPIEGDNTPDWSGVLRMWGLNPEHFQVVEPVLFNVWGDTLGVLNRQWKGK
Ga0181351_10278934	F019308	N/A	MAKSSFRLDLFGDKELANALQAGKEQTPRAIAQAIYEEANVIFARSQVLVPVDTGILRGSGGVSSPQQGDKGYFVDIYYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIEKGHRN
Ga0181351_10278935	F008607	AGGA	MDAIYSKVAEFMTDSVVFTAKASVDKYNKPTFSGNTTVTGRLIYDTVKSKDVQGVEVVDAGKFITNGPSLTLTVGHRMVVGADTFSINAVDQISDENGAHHTVIRFGR