Scaffold Ga0181351_1015647

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1015647
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3163
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035747	Metagenome	171	Y
F054011	Metagenome	140	Y
F067693	Metagenome	125	Y
F090326	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10156473	F090326	GGAGG	VNTFTLPTGRQVEKNATHCVAVKTRGRWNHQWFKSDRGAQNEIKRLRSYSADTVAYYDIQEFKLIRPD
Ga0181351_10156476	F067693	N/A	MAQIQHYCAQNDRNGNPRRCYVLLDHGNPVAAWDEQFYGHAAVPGVWRDDAYHAERINCTIAKYKQLLRTLPSPNWAHDVPGYSHLRTLCS
Ga0181351_10156477	F035747	N/A	MYDTEIALDREFMRRMIRAYEQNLLQLVNETPDHPSGDWAQEHLQLLELLRQQTFSPLKQSITF
Ga0181351_10156478	F054011	N/A	MMYSHIRDFHKDQILHVINNYMTSEMRDHLMRECPAAYNSLCGRVVITSQVQDTGRKIIERPTDVHLSEFD