Scaffold Ga0181351_1009219

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1009219
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3967
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F005299	Metagenome / Metatranscriptome	405	Y
F008359	Metagenome / Metatranscriptome	334	Y
F008491	Metagenome / Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10092191	F003691	N/A	IKYCRIFMYWVERMTYHIKKKVYMNSRMTNEFNQFTEVSYNTNRNERPIYRNFASSKMSNSVKPKSMVEFTDFMGRTHIVSVRNNTELKKQMKFFGMLKKESSTIKQIISQYPIKLGKVEKRFIAECKRELKSVLKLNNKQLDIVLS
Ga0181351_10092192	F008359	N/A	MKKSKVNVKSNYDIKKVKRVMRMKNEGFEPTSFEVFKVSGPNKFKKYFVSRKDAKLFIDNYTDTKMTIGIVKNIMNEIKLK
Ga0181351_10092195	F005299	N/A	MNNINTPNHLIDPIDTPNEIWLNKVGYDSANKRMVAKVYKHLYNVMTLATKPSWTAIIREMLIEDNKLGKVSLNGYYSTIRKNLKDIEVIQYNGRKGLSKGKNWDRFFGDEDWSWFITNTNSGGYGRIIK
Ga0181351_10092198	F008491	GAG	MAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMTLILAISMVACGQAEVKSTEASAPVSADTTATAPVADTTSVVK