NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1008218

Scaffold Ga0181351_1008218


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1008218 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4156
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002227Metagenome580Y
F010673Metagenome300Y
F086618Metagenome110N
F102590Metagenome101N
F103133Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_100821811F002227N/AMKLTIQSKQNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIVQQGEPETLQ
Ga0181351_10082185F086618N/AMASIQRIETAVDNLINGNLTQARKSARGLTYSDIFDWLTGSVGWPENRSRACADYLVGRIDFRTYCKSDR
Ga0181351_10082186F010673N/AMNPKLPPILEKLIARDTILSSFQPDNLPQSALAYVRSHYLNDNFLWLTPEDQDELETLAPFADNLSESIRPGGGIGNPDSSVYHLFDDGSLWLKTNAYSSVWADARDFAVEIILPRMELTRMDAELLRAIGMDDAAESVRDDFFHAFAETLHRQCRIPHCDARGHWDAWSRQLGDGSREDLELGGRDSGKREGQLFAETFTPETANA
Ga0181351_10082187F103133AGGAMRYKIQMQSANGWSDLRESSNGGPYEVCLFPTRMAAVQARAEFNELAEYLEGMRIVPAETPETENIYA
Ga0181351_10082188F102590N/AMRTEQFTPGPWRQTGINVRAGDALICYAMNHHANAETPEPEKLANARLIACAPQMLLALERLTHPMADDEDLDYAREVIAKAKGQQ
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