Scaffold Ga0181351_1006483

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1006483
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4545
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010754	Metagenome	299	Y
F038590	Metagenome / Metatranscriptome	165	Y
F049487	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100648310	F049487	GGAG	MPRRKKKYMLLRGYSGRFIVVGREWYDHKGIAKLRGDRKQWWIAAQSNDQVMLQKMAGLTGKHLKM
Ga0181351_10064836	F010754	AGG	MSDWKLCRDCGDEVHIERWHLGYRHCLFCGEEAAKIERMSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG
Ga0181351_10064837	F038590	GAGG	MTMKPRYVKVDKLSKSVSQTDYLQMLDEAMKFAKVQESKPVLNAKELPIQTKKEIQE