Scaffold Ga0181351_1005957

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1005957
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4687
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006503	Metagenome / Metatranscriptome	371	N
F008996	Metagenome	324	N
F012656	Metagenome / Metatranscriptome	278	N
F034851	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100595711	F034851	N/A	SYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGFSNPD
Ga0181351_10059572	F008996	N/A	MKLLANIAYHHNPERLPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLSHPWMLTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTERFDSMFADGLYPSFTRIETYDDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSVKRLKEVLTRNPEELDKIPDNGLFRESLASFPIWSLGLKPMLEFTEQGELAEHCKVFHLTNNYKHGSRDIKILFKR
Ga0181351_10059577	F012656	AGG	MDSLMMVITTLCDCIGAVDDSNSPNAFAVKMKIVNKISDLIDKIEY
Ga0181351_10059579	F006503	GGA	MTNDQFVIAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYMQADLFAESNQNTVTIPLSNAPANPE