Scaffold Ga0181351_1005293

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1005293
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4901
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035747	Metagenome	171	Y
F067693	Metagenome	125	Y
F090326	Metagenome	108	Y
F097261	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100529310	F035747	N/A	MYDTEIALDREFMRRMIRAYEQDLLQLVNETPDHPGGDWAREHLQTLELLRQQTFSPLKQSITF
Ga0181351_10052934	F097261	N/A	MTYYVNRQAGRYHETVDEFDSRSEADRMCKEYQFGEHGRAYFYVSRVARPNWAV
Ga0181351_10052935	F090326	N/A	MNTFTLPTGRKVEKNATHCVAVKTRGRWNHQWFKSDRGAQNEIKRLRSYSADTVAYYDIQDFKLIRPD
Ga0181351_10052937	F067693	N/A	MAQFLHYCANNDVNGNPQRCYVLIDPDDNNPIAAWDEGYYGHDAVPGVWRRDAYHAERIDCSIAKYKQLLRTLPSPDWAHDVPGYSHLRSLCN