Scaffold Ga0181351_1005026

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1005026
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5010
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005088	Metagenome / Metatranscriptome	412	Y
F006789	Metagenome / Metatranscriptome	364	Y
F050372	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10050264	F005088	GGA	VGRGSFGYLIAQIAVETGIAPQALLELDSTMFANVIKVLNDRSEDIKNANRGKRRA
Ga0181351_10050267	F006789	GGAG	MALTDEDKAFLIKIGQELPTEVKVTKPPKDTTTEKDEA
Ga0181351_10050269	F050372	N/A	PYGRATGADTKTAVYSATPAINAAALMLAENIWTARFSTQNGGTSVDGYSPSPFKMSNTLMASIRGLLAPYLSPNTMVG