NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1003004

Scaffold Ga0181351_1003004


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1003004 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6016
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004839Metagenome / Metatranscriptome421N
F010541Metagenome / Metatranscriptome302Y
F031483Metagenome182N
F041648Metagenome / Metatranscriptome159Y
F052398Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10030041F004839N/AMEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGVNAYLTAIFLPINFWIAIIASTILQLGRFAVVFMDFLNPTKGRSPFPPKIALGATVIALIEVFFGLMEKYSGAEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLEEPKVIKRRKRRVAAKKVTEDAPKESKGYVTSFQTITL
Ga0181351_100300410F041648N/AMNFLTGKIDTLPNTLTDNALTRYYELRIKYLEGEKERLSNEARADYLITLDFWIYAQRMIESYVIFHKESPHEYYYDVLKTILKNLESHNENAFDTSINRLRLEVITRCNEAIIKCEQITASR
Ga0181351_100300412F052398N/AMNLPAIAMNIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKSILPLYGIDASPEHLVEVTQFISTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRGKMEEEQRQIEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADNYIDFKTQLHRAAEDTKKRAVIIAQKLAVWRIVLNRK
Ga0181351_10030045F010541N/AMTKNIYSVMYTGNAKRYQDLCQEIAAFSRREAVERFYAAMLNENYFPEDEFEWGGLVRDCDGNVIADANDESIEYDGGYFYAEQLTTV
Ga0181351_10030048F031483N/AMNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEANNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF

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