Scaffold Ga0181351_1003004

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1003004
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6016
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10030041	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGVNAYLTAIFLPINFWIAIIASTILQLGRFAVVFMDFLNPTKGRSPFPPKIALGATVIALIEVFFGLMEKYSGAEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLEEPKVIKRRKRRVAAKKVTEDAPKESKGYVTSFQTITL
Ga0181351_100300410	F041648	N/A	MNFLTGKIDTLPNTLTDNALTRYYELRIKYLEGEKERLSNEARADYLITLDFWIYAQRMIESYVIFHKESPHEYYYDVLKTILKNLESHNENAFDTSINRLRLEVITRCNEAIIKCEQITASR
Ga0181351_100300412	F052398	N/A	MNLPAIAMNIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKSILPLYGIDASPEHLVEVTQFISTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRGKMEEEQRQIEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADNYIDFKTQLHRAAEDTKKRAVIIAQKLAVWRIVLNRK
Ga0181351_10030045	F010541	N/A	MTKNIYSVMYTGNAKRYQDLCQEIAAFSRREAVERFYAAMLNENYFPEDEFEWGGLVRDCDGNVIADANDESIEYDGGYFYAEQLTTV
Ga0181351_10030048	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEANNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF