Scaffold Ga0181351_1002724

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1002724
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6232
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100272410	F019102	N/A	MSISLEEELNSAFISPEKEFMGEKLAPYTEGSRLLLLQVRDDEDSSFYFIWSFIYVHILLAKNKKEAIKLAWNKNLFREKIMEYIEGKTESDREVATTIVSNILDEAQKGKVDVIPTPHQPDLGNA
Ga0181351_100272411	F025225	AGGA	MITVELLNQTKFMHKLQQYQEASKKNMAEVINSKLGDVAVTAIGTTYRTTAAKIASELQRVEGKVVTKKVFKPIGFTKNGKVKKRKIGEYAVGYKAQNVNYVGTYKLVNWLLKNRGLPTLGKTKQGTGGLGMGTKPGTIGALARRLVAGRKSSVNYIRNGWAAAAAVFGKRANLTRGDYKPSAIKRLGGGTKAESKKSQMEGIIFNRAGDLDTRFYPVRKRTVSGAAKIGMPGLKMAIDKVMNDMNVYLARKNKEASDKLNF
Ga0181351_10027242	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEDFDAEYCLIFEAFYSETPPLFTKIQNNITDTKVYTARITGQTPTIRTDKRAWQRGLKMSLICTPSELDDGLRSLNFSQIQNSMYVAVI
Ga0181351_10027245	F014487	N/A	MPLLLLALLLCSCSPKKHTDNNFLPDYGEMGAASDAGKAK
Ga0181351_10027247	F012433	N/A	MSADQVADLRERLARIEERQVNLIAVLERHTSEIAEWTGRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFSR
Ga0181351_10027248	F006138	GAGG	MAAVTIGTPGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALLALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0181351_10027249	F026543	N/A	MTEAFWGTTNIKVASAVASFGAKPRSLDPVTRIIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVPVRVVQTKGGQTLLISENATPEQRRAILKHL