Scaffold Ga0181351_1002610

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1002610
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6332
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F021097	Metagenome	220	Y
F035274	Metagenome	172	Y
F056536	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10026101	F007026	N/A	MEQTQKYPELTWTKNEYHQLQLALDALKNIRNRECRRHMMDEHLDPHTRDILDEVISMLSDELDYDPTPNEPGEPPITAAEMHAAAWKEHQDMHR
Ga0181351_100261011	F003687	N/A	MNYQAVEQLLTQDARLLARRDAPVIDQELEEQRQAALEIFFQWQDGMREFQDLMPFCVVLQRKVDLNRDLLRWERRHED
Ga0181351_100261012	F021097	AGG	MQRNYFSDACVAIVLGTGCGLLLSVGAQKMLNRHYQNTCHNQPGHNLIYTKSFLGDTYYCINSKYMN
Ga0181351_100261013	F015587	N/A	MTALNIRKNTAAFFKGAAILVENAKVPTKVGMTEKLNEYRTRAAALIMPNDMAFVIQPKQGN
Ga0181351_100261014	F056536	N/A	MLCYYPYEGATERITWHGGESTKLLYEVEVDDCHGNPCWIEREVQTLGGGIPTGTKELLAAMSDYYQHITTMHLDNFYATIF
Ga0181351_10026103	F019817	N/A	MQVQNQIPALSINQRNLYAYYLNHKKKYGNTLCFVPKLPAQSSRLEQYLQALVRLEEYGLIRVDRSSDNYTAWIMLAPKGA
Ga0181351_10026109	F035274	N/A	MITIGKEDLNRPIEIFKIDDYYISCKSTVCHLHWVARTEQAREYIDAFFECLDVLIDGQWVDTYGSHEQGNPVSLPDQDYIACRYILATI