NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1001611

Scaffold Ga0181351_1001611


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1001611 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7426
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021520Metagenome / Metatranscriptome218N
F026250Metagenome / Metatranscriptome198Y
F039035Metagenome164Y
F067688Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_100161114F039035GAGMPFAVTNQTIGAAGTLEDSFVIPTTSRPNQFTPLNPSVVNVVNVAIAPPAPTAGTLATTIEYAQGIVSESVAEYGTQETPVVITLLATLEDAALLAEYLVRPVPAFWFGNIQVIMNGLTDAQRTTIGSLDIGSQVSVTKSFPNSTPSTVTQVMALEGISHDITPDRHIVTLYPNPSRIYTHFILDTDELDDDTKALA
Ga0181351_10016112F026250N/AMNDPKEGIMTNRQKQIGTVIGMAIMWGFWILPTAEDLPDAQPATPLEWKLFIALNFIAIVYLHILNVREHHDQLRKEAQERYWERMETRSRYYHPTNRDYQ
Ga0181351_10016113F021520GAGVTVGLGGEDGIMSHDEMRTMVVVRWHDAHSATDTWTPIDDIGTDPCEVVSCGFLLPTSDGGKEDHITIFQSKTDADDVDGVLCIPVAMVQDMKVMTKNIPGLAPSK
Ga0181351_10016116F067688GGAMVLSGSQQKTSELRRDVEVVIAALVTAVGGIITTILLKVRKENTNDHASVMEILRSVGGKVERIDSKLDSHIDWHLKEATGGEVSKRN
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