Scaffold Ga0181351_1001169

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1001169
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8339
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100116910	F044373	AGGAGG	MLRDGYFIKEEPPKIGSHYIPQFYQRPSTPEERFVQDIMLGSKPQQESPVVKLFGRLLGV
Ga0181351_100116911	F102853	N/A	MKELVLVYYAAIVVATVGFLAFFIPDQPRPTPAECGVAEITPDMSARDREVCRQLRQHRHRM
Ga0181351_10011695	F045069	AGG	MRYLLLLLAAPVMAASPGYLTYTNDISVQTVLTQDRPDWCHGMKMAFDIDGLDRAYYGCWALSQGFVHIEMLDGSKRIIPISRFTKPKEEAK
Ga0181351_10011697	F081291	GGAGG	VKRIDYWKAKLKAAQTEERIRQKELNQMAKAFERAWQQVNDIEQRIEDEKAKLARTE
Ga0181351_10011699	F037206	AGGCGG	MKCMQCGSKTHVVNTTQQPGGIRRQRKCPSCKNNAYSAEVWVAGNVMVGKSIYTNDEAALIKKKGVDARRANEDRRKKDAT