Basic Information | |
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Taxon OID | 3300022407 Open in IMG/M |
Scaffold ID | Ga0181351_1001165 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8351 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002317 | Metagenome / Metatranscriptome | 571 | Y |
F006109 | Metagenome | 381 | Y |
F017122 | Metagenome / Metatranscriptome | 242 | Y |
F043896 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181351_100116510 | F006109 | AGTAG | MTRYVVMVEDRWVTAVYDSGKGIGFTRSKEDASSWVTYERAVAAARTVAQSCNCDAAVHCVDEPAYPESWK |
Ga0181351_100116511 | F017122 | N/A | MEVIPFQEQQDPELRLGEGRSRTSAEKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPKCKVEVPATAAKKPKLARAKNGPRETARRRLKLVEKKGESTNR |
Ga0181351_100116512 | F043896 | GGAG | VSQPIADWARQSWGEVIVDQNRADLLDKLYFWDGRDKKDHPLHSTYTGLYRKYTAN |
Ga0181351_100116518 | F002317 | N/A | MDHHDEAITAKPPDNPFNQIVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLETRVRQIEMHLGPKK |
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