Scaffold Ga0181351_1001165

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1001165
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8351
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100116510	F006109	AGTAG	MTRYVVMVEDRWVTAVYDSGKGIGFTRSKEDASSWVTYERAVAAARTVAQSCNCDAAVHCVDEPAYPESWK
Ga0181351_100116511	F017122	N/A	MEVIPFQEQQDPELRLGEGRSRTSAEKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPKCKVEVPATAAKKPKLARAKNGPRETARRRLKLVEKKGESTNR
Ga0181351_100116512	F043896	GGAG	VSQPIADWARQSWGEVIVDQNRADLLDKLYFWDGRDKKDHPLHSTYTGLYRKYTAN
Ga0181351_100116518	F002317	N/A	MDHHDEAITAKPPDNPFNQIVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLETRVRQIEMHLGPKK