Scaffold Ga0181351_1000405

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1000405
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12165
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025681	Metagenome / Metatranscriptome	200	Y
F042220	Metagenome	158	Y
F046257	Metagenome / Metatranscriptome	151	Y
F095174	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100040511	F042220	GGAG	MSDFMQKQIDASERLFNMMLDDHKQRFEKIAAVYALSESLQKKLNERDAEIARLRQQLRIYETLDFM
Ga0181351_100040512	F046257	GGA	MTKNPRKRKDDYDWQAVIDGNRIGITNVIDGIRRGEVDELELEKLNNFVQFSLALMQLSGPTKWAQAKMNAELMHYIKSNVS
Ga0181351_100040519	F095174	N/A	MTDEKNILYKKDYVTAAKTDIRKTFAKFRKEQKQAEKISTIEKTQPTNIVQYKKFR
Ga0181351_10004056	F025681	N/A	VDPLTILAAAKLAASAIKQGCELYQQAKSDGMELVDAYGKVKDVVADISGHLGNFFKAHEQLEKHVHEEELKTKKARDPELSVNQEAFNRILAQKEMIRLETELRETLVYSAPKELGAIWSEFEVMRDRVKAERAEVQRQELLKQQATIWRRANIKRKIAEQMTLIVAVAFIILWFLWVMILIRMSHTFRGQFSLPSLWCVLC