Scaffold Ga0181351_1000011

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1000011
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 54409
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (81.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038150	Metagenome	166	Y
F042221	Metagenome	158	Y
F051781	Metagenome	143	Y
F057202	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100001115	F038150	AGGA	MTDDDFRRLESKVDKLTDAVGKLILFEERQVNQGQRIGAVEAQLSVHDDRLHRTDRKIDQWVNRGVGVWAAAAIVYSLIQFWKK
Ga0181351_10000112	F042221	AGGAG	MTDEDDEFERIEREIKFKLDSTRTAVVSDNYYWIPIDASTPTNVKILLLGRSGVATMGHYENTPGTQFWTHWAPLPRKRP
Ga0181351_100001166	F057202	GGAGG	MTLIQLAKQTLRRLTPAQMAATELAEAELHRLEAHTAMEYASSMVSYEDARIKRLRKFLSDAEKTV
Ga0181351_100001167	F051781	GGAG	MSILEEIRVNRTPSHMVRPAALELQKQTKRIMGEYVEREKQPGEVQASDNDLWQRPVYRTGDGDHTAQVPREGSLVAFSLPSRGNRT