Scaffold Ga0210311_1000502

Overview

Basic Information

• Taxon OID: 3300022374
• Scaffold ID: Ga0210311_1000502
• Source Dataset Name: Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1166 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4102
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.909
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004474	Metagenome / Metatranscriptome	436	Y
F023586	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210311_10005021	F023586	N/A	NKENGTLWYEQTLNMILASDSKELRSEIHLLAQNEVCAIVEKADGSYVALGFGEGLQVNDGSEYTSGVLKSDRLGHSITMAGLENDEVPDVDATVYATLLTQQSPAI
Ga0210311_10005025	F004474	N/A	MNYLISVENLKKLGLIHNNTDTKLLAVAIKRSQDMHVQPALGTPLYKALLLRVQNNDWTDPNYVTLMNEYVLPCLVAFVDYRASVLLNEKLTNKAVGRSQDEYQNANTDDETTALRDLLRKDAYFYKERLIGHLKDDQGTKYPEYIEGCEDLTCNENVQKDRTGYKPTGWII