Basic Information | |
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Taxon OID | 3300022369 Open in IMG/M |
Scaffold ID | Ga0210310_1014000 Open in IMG/M |
Source Dataset Name | Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1119 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 799 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.298 | Long. (o) | -124.183 | Alt. (m) | Depth (m) | 23 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F046638 | Metagenome / Metatranscriptome | 151 | Y |
F093912 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210310_10140001 | F046638 | N/A | KLMINTLKNSIFKNLVVLIHGPIILLSNPNTKLTFKESKSLNPLISLLSFRLNNKIYSKKQIKNLNRMSYLENISIFHNSMKTCIKLPYYKFKNKRTPVVSK |
Ga0210310_10140004 | F093912 | N/A | TNTLINVNSIKGNPKFFYSAGMFSLQKNQKTRQPKAIITILRALLAKSKIFKVKPVAVHFNNVFFNHQSYIFKKLKQKIFMKLVTSYNFRSHNGCRLKKKKRIKIRTRTRKL |
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