Scaffold Ga0224510_10463398

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224510_10463398

Scaffold Ga0224510_10463398

Overview

Basic Information
Taxon OID	3300022309 Open in IMG/M
Scaffold ID	Ga0224510_10463398 Open in IMG/M
Source Dataset Name	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	757
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.05	Long. (^o)	-121.934	Alt. (m)		Depth (m)	11
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003537	Metagenome / Metatranscriptome	480	Y
F008534	Metagenome / Metatranscriptome	331	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224510_104633983	F003537	GGA	MSLLLKKEIQFLLNNFSLLWPIDTKHAVWVAYIKTQIGIATEVSVIKVKVTVTKNSNSVFAK
Ga0224510_104633984	F008534	N/A	LAVWVAYIKMQFGIATQVTGIKVNVTVTKKRNSVSAQ

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