Scaffold Ga0224504_10273162

Overview

Basic Information

• Taxon OID: 3300022308
• Scaffold ID: Ga0224504_10273162
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 700
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.7
  • Long. (^o): -122.34
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F004856	Metagenome / Metatranscriptome	421	Y
F010571	Metagenome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224504_102731621	F010571	N/A	DADKLYEELYEKHYKEVGKTTDDVDYIEREAERLALIDLDNFEMEG
Ga0224504_102731622	F003976	GGAGG	MSKLYREYEYEKECILETLDKLEMSVRFLSVWVNEPMGLENAKYVLEKNSNRTYDLLDINMVKELVEEEVR
Ga0224504_102731623	F004856	GGAGG	MSDWLDGTKPKKIEARYSAYLSWDLDELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWNQVE