Scaffold Ga0224504_10054909

Overview

Basic Information

• Taxon OID: 3300022308
• Scaffold ID: Ga0224504_10054909
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1585
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.7
  • Long. (^o): -122.34
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042288	Metagenome / Metatranscriptome	158	Y
F088643	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224504_100549094	F088643	GAG	MKKEEKDAIIDILTKWRDMIGVNGRTVENLIDKVNQIYIPEPIDIQEVDVIKADIVNMCNQIKYDAKQNNVRGFDNTTKRMAIYKASEIKYGRTSSMERAAKDFFGKDRTTLLYWSRKSDDFIDVKDPMFVRYVNELL
Ga0224504_100549095	F042288	N/A	DSDKKGRTTKTIDEMKESIKLTVRVAAEHPDAETFKCLGNKIVLELDDYDYAYEFTMTMLNLRGDDRFEHGDLMFFNEGILIEIDR