NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224507_10390523

Scaffold Ga0224507_10390523


Overview

Basic Information
Taxon OID3300022307 Open in IMG/M
Scaffold IDGa0224507_10390523 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.03Long. (o)-122.37Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032856Metagenome / Metatranscriptome179N
F070144Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0224507_103905231F032856N/ADHLIEDVSDEMVLEYEEGVAGEVVNEFVVEEDYVMQLIEYWVDNYTMGNNKCKEIVDNLDYDIFEIDMEFGTRPDSWKQAGVWALDHAIHTDDNIQAIYKLTNEKLQELWKK
Ga0224507_103905232F070144N/AMEKVNPEMEGENWSVKKHPVHKDKYVARHINIWGSEAHTVDSLIEAMEIIGKFKNQEDWILQKREEFGDYMWNNDNFR

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