Scaffold Ga0224507_10156386

Overview

Basic Information

• Taxon OID: 3300022307
• Scaffold ID: Ga0224507_10156386
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 909
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.37
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013317	Metagenome / Metatranscriptome	272	Y
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224507_101563862	F013317	N/A	LIEKKKWDYLADIRARTGAKTLYINATPQGIYQFDLGALIEPDWVLKSLPVTTDFSNRAHSERLCGFLDIRLAELLLV
Ga0224507_101563863	F014016	GGA	MVNKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVA
Ga0224507_101563864	F014613	N/A	MQMLPNLSDEAVVGIIIGVPFIGLYIWSLWNSAKAKAFNQGYKRGRESVRYTEI