NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187827_10588477

Scaffold Ga0187827_10588477


Overview

Basic Information
Taxon OID3300022227 Open in IMG/M
Scaffold IDGa0187827_10588477 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)651
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)18.2Long. (o)-104.2Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032036Metagenome / Metatranscriptome181N
F038427Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0187827_105884771F038427N/AFNDMTHEQVMSTIKEGLHHLTTIDLVSLHAEISKVQIEHSHKNEIEEEDG
Ga0187827_105884773F032036AGGMKWIVLVYLTVAVGTTEGNISYTRLEHLTKDFQECIDIEQQINDIIHRGRESKTKYVRSLYWEYKNTLGDIKAECVFANFPLPYSKKFNKEKK

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