Scaffold Ga0187827_10204158

Overview

Basic Information

• Taxon OID: 3300022227
• Scaffold ID: Ga0187827_10204158
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1340
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 18.2
  • Long. (^o): -104.2
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025517	Metagenome / Metatranscriptome	201	Y
F097498	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_102041581	F097498	GGAGG	MIMEFGNKYVGGDCGGNYYSLFIYPIGIEFFFFNEDIEVSLTFWPLKITFGIGRNRSLFS
Ga0187827_102041585	F025517	N/A	VLSSNQLAPTIMYGINAKLPKSLFTCFMCHITKIQDSYIWGNFAIPPEHPYEEQRICKKCAVKEHGKKNKRKLIDIIEERTKEWLKKQQ