Scaffold Ga0187827_10180733

Overview

Basic Information

• Taxon OID: 3300022227
• Scaffold ID: Ga0187827_10180733
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1454
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 18.2
  • Long. (^o): -104.2
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_101807332	F016410	N/A	MRKFSSKKEQLEWADKLLRKLSERNTGGVTPIIKTMIIEEYIRRLKK
Ga0187827_101807333	F010920	AGGAG	MSKIKKYDVLISYPIQVGAEDEEHVREILMASPLLRDAADLTLKIVEAKDE
Ga0187827_101807334	F067830	GGAGG	MSKPKLEIVDTVDGKTLAYRNKTCVEIFPRTQEVGFTDYSYSYEEIIAIGKKLEELLEKDLADVI
Ga0187827_101807335	F016673	N/A	MISESDTEDIVIKSYVELYLKALNESRSYKFIKIIKSRMFELIKRKQL