Scaffold Ga0187827_10065265

Overview

Basic Information

• Taxon OID: 3300022227
• Scaffold ID: Ga0187827_10065265
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2836
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 18.2
  • Long. (^o): -104.2
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F095326	Metagenome	105	N
F103070	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_1006526511	F016410	N/A	EQLEWADKLLRKLGDKNTGGVTPIIKSMINESYIRRLKNE
Ga0187827_100652652	F095326	N/A	MLSKKDKSKISSRKHRRLHGICKDGSSSSREMAQATRFNMYRRIREEKENPYTTHPLSFEEFDNIPDIEDLIKEKE
Ga0187827_100652653	F103070	AGGA	MINRKWSFKTTKELVEFVKGFEERQDKTLDVNYFKLIAVLRDKPKNRTIDQESDNYIDRELGTIDSITDMKRTENMQHPAETKWMVRKAKTMIKDVK
Ga0187827_100652658	F016673	N/A	MCFPSQYFITMESESNLEDTVIKSYLELYLRALNDSRPQKFINIIKKRMMVLIKRKYLRN
Ga0187827_100652659	F010920	AGGAG	MSKIKMYDVLISYPIKVGAESPEHVREIIMANELLRHAADLTLEITEEKSK