Basic Information | |
---|---|
Taxon OID | 3300022227 Open in IMG/M |
Scaffold ID | Ga0187827_10027872 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4968 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | 18.2 | Long. (o) | -104.2 | Alt. (m) | Depth (m) | 150 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007944 | Metagenome / Metatranscriptome | 342 | Y |
F009609 | Metagenome | 315 | Y |
F044542 | Metagenome | 154 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187827_1002787210 | F044542 | GAGG | MKHKDYKKLMGTPFDELSDEDQKKRKKEFHRRLEVAQMFITGMIKGHVNDDIGKLMDDDDPLKDAVELLKLKINEVEAIA |
Ga0187827_1002787212 | F009609 | AGGAG | MNLQGKKVKVTKTITSVNGALHEGETVLVERRENGHWRCRDNMGRIFYMEESDLKVVKK |
Ga0187827_100278725 | F007944 | GGA | MKMEHWSEHEKYIVMIDGNSGSIKGARLGYQAFLDFKRVKEALIAMSKGEGSYSYDGDIYKRPITSSRAFQILEKIERCQWDDDIRTVAKQIKAGSMISPVR |
⦗Top⦘ |