Scaffold Ga0187827_10016402

Overview

Basic Information

• Taxon OID: 3300022227
• Scaffold ID: Ga0187827_10016402
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7100
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 18.2
  • Long. (^o): -104.2
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007138	Metagenome	357	Y
F027539	Metagenome	194	Y
F062183	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_1001640211	F027539	GGAG	MNLTWFYFHCVLALVVLYKDYNGTLEESLNKFESKIGLYTYVDTSHREEEAPFYIPPIEEEIDSTFILPDYEGIDVPVDSTMDRGENE
Ga0187827_1001640213	F007138	AGGAG	MFDKTIKLTGEYPSDFKPTMSVMEIQQYFDAYSFHDGRMIGGSKSHYHMEHPDDLIVFNANVLMTGYGKVWYGDLNLTEDYLVLKDIAKSLNSTLYVLWERDGRFGEENKPIDELIKKAVWNTDEDKPTNEWYRNKVKGDYE
Ga0187827_100164025	F062183	AGG	MMWNHDEEFEYIVPSGKPLTVAWNMDGDDVEITAIYWEDKKEQSHYTGDELWEMDSNLAEDIMSYIENEFLESEDFWMSKSGYDY