Scaffold Ga0187827

Basic Information
Taxon OID	3300022227 Open in IMG/M
Scaffold ID	Ga0187827_10008452 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11152
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11152

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (78.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	18.2	Long. (^o)	-104.2	Alt. (m)	Depth (m)	150
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

18.2

Long. (^o)

-104.2

Alt. (m)

Depth (m)

150

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015660	Metagenome	253	N
F016292	Metagenome	248	Y
F020445	Metagenome / Metatranscriptome	224	N
F066702	Metagenome	126	N
F084095	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_1000845213	F084095	GAG	MDQKKIIKQTLDRIRKNTNFAYQRAKDRNIKNPTTFAQAKQIKLKRKTLSNDRFMQYLKDISKEDTSN
Ga0187827_1000845220	F066702	GAGG	MILKEIKYRSYKAKIVKLTRKQAKSGSMYGCYFPNTQTIAIQEKLPKITLLDTMLHEIGHFIADKSKIRLANLGEEGTVNFVASEFAKIFMQNPKLLTFIKRCTAR
Ga0187827_1000845222	F016292	N/A	MTNQPKILGDCYKKFNLAHTSKSQNTIPDDIRFRNYIVLTPKEKANLPSNCSFTGGTIAHEVVQLIKCKNVTYKDAAKAVAKKIKYYQSIDEKDQIKFDYIVQNLESLTNNHIENINEVAKQGWQSELEYTYWADGIKTYFLCYVDLVGKTHFGDIKNVFGTLTKTKAGFSYSKRKCPQVPYHSDCLQISLYQKLLPKLKPFLTYASDSDRKIFTPENCVELRPESLQFYYEELILYQRCWEKKLELANGDIKVLALLCKPDFSEIRKNGFWWKGIDPDIIKRFRGYYEL
Ga0187827_1000845225	F020445	AGGAG	MADNNYDNSGAMWKRQPRDTDVTGKKYPQFEGNITVDGNKKKVAAWLNVEKTKDTQPDISLRISDYMEKKE
Ga0187827_100084523	F015660	N/A	MANISKYSKELIDSIMKDLAHGISIKASLKNHNLSWECFRKWLIDTKKYPSLRGKYSQAKQDGIEYSLSDAQSLINEAVQDSKHKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDHLKVSGDKDSPLIVKWNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187827_10008452

Overview

Ecosystem & Geography

Associated Families

Sequences