Basic Information | |
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Taxon OID | 3300022225 Open in IMG/M |
Scaffold ID | Ga0187833_10257601 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 990 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | 20.3333 | Long. (o) | -107.0 | Alt. (m) | Depth (m) | 400 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000782 | Metagenome | 894 | Y |
F008153 | Metagenome | 338 | Y |
F012880 | Metagenome | 276 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187833_102576011 | F008153 | GGAG | MPKKELITVNNVNIQPLMESLVELVKDKKLTGELDDLINAKIPEKTSADWKLICGVLCNSVVEWVAMNKNEEVQSTDLLRHLQSDIGYIMKRLGLN |
Ga0187833_102576012 | F012880 | GGAG | MKFNVVTLIWSTALVLLTFNVCIMAIDWQFTNTIVYKFILVMNGFMFGLVINEWSNNA |
Ga0187833_102576013 | F000782 | GAGG | MTKTEFKNSVNGIFSVRWLKNDGTEGYIHRGILGLNKKVDGQPKEHSDYVLVYKIGNGYGTRRRWGNINPNTVIQINGVAV |
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