Scaffold Ga0187833_10124648

Overview

Basic Information

• Taxon OID: 3300022225
• Scaffold ID: Ga0187833_10124648
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1609
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 20.3333
  • Long. (^o): -107.0
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F025387	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187833_101246482	F025387	AGGAGG	MTKRFEKYGELLVRTITYPIRAAIGAGRCIHKSTPDTLEDCIPFTIKKKEEKDGTEANS
Ga0187833_101246485	F019555	GAG	LNGWEEASNIINIQWKMMFKIILKGKFRERKIDLSVATKVMYHQPFTGSIQSEHIKWWKRYWIKPIMLEILYPKKGWIQLVKIFREGKPSIRVITVASSFGLRELLVHKQLYGEEVQNEQKRKKKLEQFRNKQKNMQTTNIAPSME