Scaffold Ga0187833_10085973

Overview

Basic Information

• Taxon OID: 3300022225
• Scaffold ID: Ga0187833_10085973
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2052
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 20.3333
  • Long. (^o): -107.0
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F019024	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187833_100859732	F000060	GGAG	VIQQELELLEVGPHHVFLINMAQKFNTEFNYRYQVIGCTPWEKIKTLKGFLEGRIRAQALEEVGNLKFQAKLAKLKHLQNSGNGLEHEILELKAEIMEAESHEGTLKEAFELTKDEIKILRKLLKELYVLAEPTRIEGYTDEEMFEANAANEFTVDIGREIQAEMIANGRPSPAKLRNAMSNPYTWNALKQIGLIPKKTKILEGNVNPKLKIELKGVEDETV
Ga0187833_100859733	F019024	AGGAG	MKLYKLEASNWETFWGTPEEPYENLNPNNRKVITIAQTPSCDAFLYLSNETYDELELLTSVPTGFIFTYCQAWGLTIDD