NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187833_10068164

Scaffold Ga0187833_10068164


Overview

Basic Information
Taxon OID3300022225 Open in IMG/M
Scaffold IDGa0187833_10068164 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2383
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)20.3333Long. (o)-107.0Alt. (m)Depth (m)400
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F062176Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0187833_1006816410F062176N/AMIYEVHITTINKNFSYKVRAENVLEAEDEALKKLKKDIPKDHVTAGQYSVEHIVNLKEA
Ga0187833_100681643F013467GAGMTVGLLKNWVWCEDCLEWKDAGDEVSFVNIEEDSFGKDLMTFECDKCENTNKNNIISSATKPKGA

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