Scaffold Ga0187833_10017693

Overview

Basic Information

• Taxon OID: 3300022225
• Scaffold ID: Ga0187833_10017693
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5672
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD8-C175 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 20.3333
  • Long. (^o): -107.0
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025053	Metagenome	203	Y
F032270	Metagenome	180	Y
F057285	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187833_1001769310	F057285	AGGAG	MSKSNGLIFTINTRNKSYNLLKEVYKDFGVVFHPKTTVDSVANFVKEKKQDAKATTEASSKVRQADSERTGPVGKAKESKVQQKSFSMEDTQCKISSSFSLKREK
Ga0187833_100176933	F025053	AGG	MKLTEKVYNIGYLLQKSIPLTKRMGVYCGINKQYKEVVYIGKSKDYYKRIPSSLEEKIKSKQDENCKDYGCELIAFIPCNTVQEMDKLEIDLITYWKPYYNQQHNSGYYMNNDNKRLREILRKEFKRNLYTYEILFSQNALKNYYSMGNTFNLAKHYIKSNSTIGKTRKNEEQKEKEINRFALKLHSIMFINYDSFKPFYERVEKEKERTRSSSYRFL
Ga0187833_100176937	F032270	AGGAG	MPKLIPKVKKLAFMCTKCFNTKVDKLAWFFGNSLLWNESLLCRTCFSESFNKLTEEQRKEWAFYANKKPR