Scaffold Ga0187833_10004683

Overview

Basic Information

• Taxon OID: 3300022225
• Scaffold ID: Ga0187833_10004683
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13245
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 20.3333
  • Long. (^o): -107.0
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013819	Metagenome / Metatranscriptome	268	Y
F018449	Metagenome / Metatranscriptome	235	N
F078819	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187833_1000468312	F078819	GAG	LQDEVKLWRSVIKRAILDCCGIFEDSKFNTRIATRHKIIFEAERWFNIKTDFYEVCNFANMQPNDVYEIKENAKRYFKNSSEERSTLLSALLDRLLQRYY
Ga0187833_1000468322	F018449	GGAG	MNKIVIILFAFLLVSCAGYKPVADLKASRNANDYQEDRQHCRLLIKEEFNSFYAAWYDRELLSRCLNGRGHNVLNTYTIGN
Ga0187833_100046834	F013819	N/A	MANKYLSINVKNNLKEFTRKLSRFEKSQVPFVSANTLTNVAFEVRQNAINKSFPQAFKNSTVASRMAKGRLRVIKAKKKDYAMGMLSAKVLDKSANPLEYLLKHQTGGIKRAKSGNFIAVPTSKIKKKLGIRRNPQWRPTAVRDMKGVRVVKSGKFVRGKSEQAIIKGSERYYSLVKTVPIPKRLYFEENAEKTVHKKILYFWNTNMQRALRSSKFR